Markless (Manual) Digitizing
_______________________________________________________________________________
Hello Tamra,
Thank you for your message. Yes, in theory, you
are correct.... if it takes one minute to digitize a single image and you
wish to digitize one second of video at 60 images per second, then it would
take 60 minutes to digitize this sequence. However, while this works out
mathematically, this is not a realistic scenario. I will explain below.
The "manual" mode of digitizing is also referred
to as "semi-automatic" digitizing. In the first image of a sequence, the
software does not have any idea where the desired points are
located, therefore, the user must move the cursor to each point and press
the mouse button to digitize that point. The APAS software incorporates a
prediction algorithm that will position the cursor in the expected location
based on previous information. In the second image, the software only has
one previous image to work with (Image #1) so the software will
automatically place the cursor in the same location for each point that was
digitized in the first image. The user then makes any minor adjustments (if
necessary) and clicks the mouse button to digitize the location of the point
in the second image. When the image is advanced to the third image in the
file, the software now has two previous digitized locations to work with
(Image #1 and #2) so the software uses both position and velocity measures
to predict the location of each point in the third image. As with the
second image, the user makes any minor adjustments and clicks the mouse
button to confirm the location of each point. After 3 or 4 images have been
digitized, the prediction algorithm uses position, velocity and acceleration
measures and works very well and the user is only clicking the mouse for the
digitizing process. This "semi-automatic" mode greatly increases the speed
of the digitizing process.
What this means for practical purposes.... An
experienced user can manually digitize a full golf swing, or tennis swing
from 3 cameras (60 images each) in 15 or 20 minutes.
There are other options that can be used to
increase the speed of digitizing, though the use of these will depend upon
your exact applications.
- The APAS does not require that every
image be digitized. The user can digitize every second or third image
during portions of the video where the movements are relatively slow. For
example, on a simple gait analysis, if the subject is walking very slow,
then the user could digitize one image, skip one or more images, digitize
another image, skip one or more images etc.... The APAS will automatically
use a linear interpolation to fill in the missing data
- The APAS-XP software option includes the
CAPDV software module where video can be captured directly to the computer
hard disk drive from up to five cameras simultaneously. This significantly
reduces the time required to capture video individually from multiple
cameras and then synchronize the video together.
I hope this helps to answer your questions.
Please feel free to contact us for any additional information.
Sincerely,
John Probe
Ariel Dynamics, Inc.
On Wed, May 13, 2009 at 9:52 AM, <rww5325@verizon.net>
wrote:
Hi RobynOkay, finally got a handle on your file.1. You sent me the wrong .cf
file. It did not match the 1t and 2t and 3d. However, I took the .cf file
you sent me and changed the name to match the others. It had three
trim.trim.trim in it and I simply changed it to
trim.cf. I think the real .cf is in your computer but you missed it.
However, the corrected .cf worked well. 2. I was able to view the stick
figure but it was aligned from the top. This is a function of how you set
up your calibration volume. More on this later. 3. I was able to align the
file on the positive x and get a walking figure. It was very rough and you
are right, many kinematic parameters were unavailable. This was due to the
fact that you did not perform filtering on this file. Once filtering is
performed, all parameters are available. So, I opened filter, loaded the
file and hand filtered to the best values. It required around 10-15 mm on
the x and z but 50 on the y. Why?? 4. When I was able to re-load the .cf
and vids on digi, I looked at your calibration volume. It is very low and
not big enough. In display, if you select VIEW/MULTIPLE, you will see
every frame and note your stick figure goes from smaller to larger. This is
a function of being outside your calibration area. As a rule, you need
2/3rds the height of the subject and about 2/3 rds of the walking length.
We do this with a simple rectagular frame. I use 3 meter long by 1 meter
wide by 2 meter high. Your configuration is way to small. Anyway, I sent
you back the corrected file. You should be able to look at it and do
measurements. However, your accuracy will be poor due to the calibration
shortcomings. Let me know if you understand all the above and need further
help on the next pass.Bob
ps- make a new file folder for these corrected files to view from. Also,
if you re-load in digi, use the .trim avi's not the .trim.trim.trim. As to
the name of the file, you decide this yourself. It just defaulted to .cam1
for the name of the project file because you did not create your own name.
This has nothing to do with the names of the .avi files. That is why you
see .cam1 in both t views on the screen.
May 12, 2009 06:31:48 PM,
robynbrandt6@hotmail.com wrote:
Hi again Bob
Okay, so my camera's were anywhere from 45-60 degrees apart, hopefully that
is good enough.
If it helps at all, i was getting an error message that said, MJPEG Field
Image Order Undefined, Use Image/Video to set order, but i have not recieved
this message as of late, and i dont think i have been doing anything
different to have changed it
However, I did end up with subject.cam1.trim.1t [subject.cam1.trim.avi] and
subject.cam1.trim.2t[subject.cam2.trim.avi]
So my 1t and 2t seems like its okay, its my cam.1 and cam1 in the titles,
but if that is as you say, irrelevant, than I am not sure why i can't
display 3d data.
I hope these are the right files this time...they are all new from the last
set i sent you
Thank you again
Robyn
~ When you change the way you look at things, the things you look at change~
~ True greatness and sheer stupidity all occur to test the limits of your
soul~
~ A mind that has been stretched will never return to its original
dimension~
Date: Tue, 12 May 2009 16:35:59 -0500
From:
rww5325@verizon.net
To:
robynbrandt6@hotmail.com
Subject: Re: RE: update
My mistake, you did only send me one file plus the .cf file. Please send me
the second video and the 3d file of your completed study for me to
examine.Bob
May 12, 2009 10:25:06 AM,
robynbrandt6@hotmail.com wrote:
Hi Bob,
Oh sorry!
I didn't realize you were away, I just never heard back and then didn't know
what to think.
Here are a couple of my files. My issue must be something very simple, I
just cant get my head around what.
I can't get 3-D data in the display mode.
I have 2 camera views.
In trimming i open the AVI from each view
In digi. I select 2 views, and put the AVI in each, however that this
point, both camera views that are opened are labeled as cam1. I can't seem
to get one window opened as camera 1 and the other as camera 2. Even though
I can open the AVI from camera 1 and camera 2, they are both get saved (seperately)
as cam 1
Does this make any sense to you?
I am not sure if the files I have attached will show you this problem, but I
hope so.
I seem to go through the digi and transfom modes fine (doing it manually),
but in the end display, i can only select linear displacement (not joint
angle or 3-D which I am intereseted in)
Thank you so much for your assisstance with this finicky problem, I am
blonde and hate to admit it, but sometimes it is the really simple things
that I tend to over look...
Robyn
~ When you change the way you look at things, the things you look at change~
~ True greatness and sheer stupidity all occur to test the limits of your
soul~
~ A mind that has been stretched will never return to its original
dimension~
From:
kincon@bellatlantic.net
To:
robynbrandt6@hotmail.com
CC:
gideon@arielnet.com
Subject: Re: update
Date: Mon, 11 May 2009 15:53:26 -0500
Hi RobynBeen out of the country for a couple of weeks.
Sorry, I don't remember getting the file. Send it again and let me know
what are your current problems, if any. Best of luck with your thesis.Bob-----
Original Message ----- From: Robyn Brandt To: Bob Wainwright Sent: Monday,
May 11, 2009 2:12 PMSubject: update
Hi Bob
It has been a while since we corresponded. I did eventually send you one of
my files, but have not heard anything back.
Can you please let me know if something is wrong in any respect.
I have been a bit side tracked writing about 100 pages of my 150 page
thesis, but am ready to get back into the technical part of the project
again.
Please do touch base and let me know if there is anything that is not
okay from yours or Gideon's points.
Thank you for keeping me up to date.
Robyn
~ When you change the way you look at things, the things you look at change~
~ True greatness and sheer stupidity all occur to test the limits of your
soul~
~ A mind that has been stretched will never return to its original
dimension~
From:
kincon@bellatlantic.net
To:
robynbrandt6@hotmail.com
CC:
gideon@arielnet.com
Subject: Re: DLT and Filter
Date: Wed, 8 Apr 2009 09:49:19 -0400
Hi RobynSounds like you may have digitized the files
individually? At any rate, it does not matter. Something is not quite
right. It looks as though you do have your files named correctly. You
correct the problem as follows:1. Open the Transform Module. Open your file
"subject.cf"
It should show two views. Check each view and pres the 3d button on top.
This does the DLT. For some reason, your digi program is not letting it be
done automatically. After transformation, it will automatically filter the
data to a very small degree. You will than be able to perform all functions
in display because it will be transformed and filtered. 2. If you want to
filter the data by hand (probably a good idea), you can do it through the
filter module. Let me know if this works for you. If not, send me the
files and I will see what I can do but I am 99% sure this will solve your
problem.Bob----- Original Message ----- From: Robyn Brandt To:
kincon@bellatlantic.net Sent: Tuesday, April 07, 2009 4:44 PMSubject:
RE: dropping frames
Hi Bob,
To give you an update on this whole mess....i replaced my hard drive and
downloaded another version of the software. It is working just fine now. I
also have upgraded my RAM (to 2 GB).
I am now processing all my videos and i hit a snag...if i could trouble you
for one more piece of help?
I have done the digitizing, but i think it is something in the way i am
saving the data that is not stopping me from being able to use the display
option to properly extract the data i need, i'll explain here:
i have 2 camera's, therefore 2 views.
in digi i have them opened as: subject.cam1.trim.1t[subject.cam1.trim.avi]
and subject.cam1.trim.2t[subject.cam2.trim.avi]
in the digi when i click on DLT it tells me i have insufficient views.
also, in the display option i can only extract the raw position (not joint
angle etc which i want to use)
Can you see where i am wrong. i am using the 2 different avi files, but
both views are named for the camera 1...how do i correct this? this didnt
happen the first time around when i did my pilot study, so i am not sure
where i have missed up, but i have spent a few hours trying to play around
wiht it....
and lastly, are you aware of any 'gold standard' so to speak about these 3d
video imaging programs? or specific peer reviewed articles that reference
them (not just the ariel, but any...as in what is the gold standard, is
there one?)
Any help is appreciated....and very much so already to this point
Thanks,
Robyn
~ When you change the way you look at things, the things you look at change~
~ True greatness and sheer stupidity all occur to test the limits of your
soul~
~ A mind that has been stretched will never return to its original
dimension~
From:
kincon@bellatlantic.net
To:
robynbrandt6@hotmail.com
CC:
gideon@arielnet.com
Subject: Re: dropping frames
Date: Wed, 18 Mar 2009 13:30:22 -0400
Hi RobynRe: computer- I would save my money on computer
check and re-loading the disk. It sounds like you do indeed have a problem
with the hard disk itself. If it were me, I would buy a new hard drive for
the computer, load from scratch and go from there. I believe this would be
the cheapest solution. Your study sounds great. I would love to see your
results when finished. Best of luck with it. Let me know how the solution
for the computer goes, when you determine what to do.RegardsBob-----
Original Message ----- From: Robyn Brandt To:
kincon@bellatlantic.net Sent: Wednesday, March 18, 2009 10:10 AMSubject:
RE: dropping frames
Hi Bob
Thank you AGAIN for the help...here are my answers
1. If i use one camera i drop less frames, but still drop them
2. When the problem originally started, just prior to it, i had created a
new folder save a copy of the temporary files (as i had not saved any to
drive yet!) and recieved a messsage that there was a problem with my hard
disc the next day. I then followed a 5 step prompt to do a systems check on
my computer and everything came out okay. since then i have done all the
defrag etc, but not prior to.
3. I have borrowed my sisters laptop to finish off my study, reloaded APAS
on it and it is working just fine, so its obviously on my laptop...I am
going to look into doing one of the two options of wiping things clean or
taking it in...just not sure yet. I have been recently getting an error
report every single time i close my internet browser screen, something is
not right for sure
As for my work, I am almost (hence doing my thesis) an osteopath. I am a
student in osteopathy but do some teaching at massage therapy schools, and
may consider once i am done my thesis teaching at the osteopathic schools if
there is a opening for me.
My work is to determine if osteopathic techniques can influence the body in
three-dimensional parameters (center of mass, segment joint angles etc.)
It is quite a small and unique field and i have undertaken this giant
project all on my own!
I really hope to find some significant results, although I am not sure what
the statistics will show yet, i did a pilot study which showed a positive
trend, but still have to see.
Much of osteopathic work is treating various organs/bones/softtissues in a
very volumetric and three-dimensional manner, so to me there should be a way
to marry the two ideas.
Thanks again, I hope this helps for some info
Robyn
~ When you change the way you look at things, the things you look at change~
~ True greatness and sheer stupidity all occur to test the limits of your
soul~
~ A mind that has been stretched will never return to its original
dimension~
From:
kincon@bellatlantic.net
To:
robynbrandt6@hotmail.com
CC:
gideon@arielnet.com
Subject: Re: dropping frames
Date: Wed, 18 Mar 2009 09:22:55 -0400
Hi RobynLast thoughts:1. Can you successfully capture
one camera without dropping frames, if so, up to how long?2. When you lost
the abiilty to capture two without dropping, did something else occur with
the computer at that time? (loading new software, etc.) 3. Last but least,
I still think you have a software, adware, virus problem that you are not
detecting. We know your computer is fast enought, 1gb ram is adequate for
two cameras, you did it before, it will work okay on the next computer
(unless your cables have a problem, which you will find out soon). After
this next correspondence, you may have to take it in to a computer expert to
see if your registry is congested or you have some other problem. Instead
of spending a lot of money on a cleanup, you can also consider the
following: backup your files, wipe the hard disk and re-load XP from
scratch. Just for my curiousity, what kind of work are you doing with APAS?
Are you a student or teacher? What is your specialty? I am in Point
Pleasant, NJ and have successfully used APAS for over 24 years for sports
medicine, workers compensation and physical therapy. I am curious about
what you do because there may be some things we can talk about from a
business prospective for your future activities. Of course, you do not
have to share any information with me, that is entirely up to
you.RegardsBob----- Original Message ----- From: Robyn Brandt To:
kincon@bellatlantic.net Sent: Tuesday, March 17, 2009 5:02 PMSubject:
RE: dropping frames
Hi Bob
I am located in Toronto, Canada
I have windows xp
I have captured and saved 120 video's without dropping frames
I now have more free space on my c drive then used space, 38 GB free (33.4
GB used)
(excuse the lack of computer knowledge) i have 1.59 GHz, 1.00 GB of RAM
let me know what your thinking?
I have successfully downloaded a new APAS to a second borrowed laptop but
still want to get it fixed on mine if possible
thanks so much
Robyn
~ When you change the way you look at things, the things you look at change~
~ True greatness and sheer stupidity all occur to test the limits of your
soul~
~ A mind that has been stretched will never return to its original
dimension~
From:
kincon@bellatlantic.net
To:
robynbrandt6@hotmail.com
Subject: Re: dropping frames
Date: Tue, 17 Mar 2009 16:05:26 -0400
Hi RobynBut I think I remember your saying that you did
not have a problem before a certain point with dropped frames? How much
Ram do you have? What is the operating system? (vista , xp, etc) Where are
you located Robyn? If you only have a C drive, that is okay, sometimes
they are divided into C D. By the way, how much memory is left on your C
drive?Bob----- Original Message ----- From: Robyn Brandt To:
kincon@bellatlantic.net Sent: Tuesday, March 17, 2009 3:14 PMSubject:
RE: dropping frames
Hi Bob
I am storing my files on an external drive and the temp files on my c
drive.
Do you think this problem can be my RAM?
The only drive that shows up in 'my computer' is my c drive, thats the only
one i have defrag'ed, should i try and find a d drive?
I am at a loss....
Robyn
~ When you change the way you look at things, the things you look at change~
~ True greatness and sheer stupidity all occur to test the limits of your
soul~
~ A mind that has been stretched will never return to its original
dimension~
From:
kincon@bellatlantic.net
To:
robynbrandt6@hotmail.com
Subject: Re: dropping frames
Date: Tue, 17 Mar 2009 09:29:56 -0400
Hi RobynIf you are trying to send temp .avi files upon
capture to the external hard drive it may be too slow. That is why I
suggested using the C or D drive on the laptop for the temp files and the
external to store them (if you do not know what I mean here, please let me
know). The USB cables work fine at 15 feet. You probably do not have to
defrag the external but make sure you defrag every drive on the internal. If
all the suggestions fail, I am thinking perhaps you may have developed a
problem with the internal hard drive. Anyway, please try what I am
suggesting and see if it makes a difference. Please let me know.
RegardsBob----- Original Message ----- From: Robyn Brandt To:
kincon@bellatlantic.net Sent: Monday, March 16, 2009 9:16 PMSubject: RE:
dropping frames
Hi Bob
Thank you again
I did not defrag the external drive, should i? its brand new basically.
I have usb cables that are under 5 feet and my subjects are within 15 ft for
the most part. I am now trying to download the software on a new computer
and start over basically...
I could try a signal booster, but its not even working at close range in
some trials.
Thank you so much for you help...i really appreciate it
I will let you know
Robyn
~ When you change the way you look at things, the things you look at change~
~ True greatness and sheer stupidity all occur to test the limits of your
soul~
~ A mind that has been stretched will never return to its original
dimension~
From:
kincon@bellatlantic.net
To:
robynbrandt6@hotmail.com
CC:
gideon@arielnet.com
Subject: Re: dropping frames
Date: Mon, 16 Mar 2009 10:46:41 -0500
Hi RobynOkay, that is one more clue. If you use usb2,
you are only good for 5 meters. After 5 meters, you need a signal booster
on the cable. They sell these for only a few more dollars than the 5 meter
cable. I have many installations where I use this configuration. You
should have no problem with two cameras on usb2. If your cables are longer
than 5 meters, try shorter cables and see if this is the problem. By the
way, did you defrage the extra hard drive that you use for data collection.
If it is an external, you may have to use the hard drive on the computer for
the temp file and the external for the storage, after it is complete.Let me
know.Bob----- Original Message ----- From: Robyn Brandt To:
kincon@bellatlantic.net Sent: Monday, March 16, 2009 7:38 AMSubject: RE:
dropping frames
Hi Bob
Thank you for the email.
I do have an external hard drive that has the video's i have been collecting
on them.
I recently have done a virus scan (so if i have one my computer is not
detecting it), defragmented, and done a disc clean.
The laptop i am using is the same one i do use for the internet,
unfortunately I only have one and this is a one time thesis project for me,
so likely will not be buying a second, although, I may try and borrow one
and download the software again to see if its my computer.
I have not needed firewire, i was on usb 2-enhanced and was collecting the
data just fine, it seems unlikely that if it was working okay before, all of
a sudden i now need firewire, although at this point i am willing to try
anything, is there something i should know about the length of the cable if
i do get them?
Thank you again for your time helping me, these technical blimps can be
very frustrating
Robyn
~ When you change the way you look at things, the things you look at change~
~ True greatness and sheer stupidity all occur to test the limits of your
soul~
~ A mind that has been stretched will never return to its original
dimension~
From:
kincon@bellatlantic.net
To:
robynbrandt6@hotmail.com
CC:
gideon@arielnet.com
Subject: dropping frames
Date: Mon, 16 Mar 2009 07:15:30 -0500
Hi RobynI am Robert Wainwright, P.T., long colleague of
Gideon Ariel's and occasional tech consultant. I have been following your
emails. I would suggest you get a second hard drive and dedicate it to the
video data collection only. They are very inexpensive these days. I would
have bet on the defrag also. There is also a possibility that you have
ADWare or some sort of virus hidden in your system. This will screw up the
frame grabbing also. I never allow my data collection computer to go on
the internet. It is not logical that it works great and than suddenly does
not. I have six cameras collecting data at all times with no dropped
frames. Last thought, how long is your firewire cable?RegardsBob
www.arielnet.com
Gideon Ariel, Ph.D.
--
�� �� <yb1017@hotmail.com>
writes:
Ross
Good luck with the swimming analysis.
Do you know Shuping Li? He has just finsihed his PhD at Edinburgh and is now
back in China.
Please do not hesitate to contact me if you would like to discuss the
problems further.
We have tried uisng MATLAB to identify pixels of contrasting colours
(differences in RGB content) to overcome the effect of the blue filtering
that reduces the contrast of black and white. However, we did not get as far
as finding a system that worked.
6. Try using black balls attached to the swimmer. Black balls from hobby
shops can be useful - We attach them using a hot melt glue gun to several
layers of white surgical tape.
5. If you are using 3D methods have the camera deeper. The markers may be
less obscured by bubbles when looking upwards rather than from the side.
4. Have the cameras closer to the swimmer.
3. Increase the sensitivity of the software to detecting diferences between
black and white
2. Increase the contrast by using a white background against the black
marker.
1. Try changing the size of the black markers.
Your problem is a very difficult one. We do have some success with automatic
digitising using the APAS system. As far as I am aware APAS is the only
system that uses black markers so you will have more success wioth this
system than any other. Another advantage is that even when you lose the
marker for a few frames you can digitise manually until it starts picking
them up again. In addition to the problem with bubbles we have found that
the blue filtering effect of the water reduces contrast. There are several
things you could try:
Hello Yang Bin,
http://www.hotmail.com
�������������ĵ����ʼ�ϵͳ�� MSN Hotmail��
_________________________________________________________________
F&H, Yang Bin
Thank you very much!
How can we resolve this problem?
clearly, so we cannot digitize automatically.
bubbles. In the water, the air bubles are white. We cannot see the points
pen. But when the athlete's speed is a little high, there are too many air
use the automatic digitize. We paint the angle points with the black marker
We use the cameras under the water to capture the video data. They want to
Now we are dealing with the matter of National Swimming Team of China.
International Sports Biomechamics Conference in Beijing last year .
I am Yang Bin, an technician of Beijing F&H Co, China. We met at the
How are you?
Dear Mr. Sanders:
____________________________________________________________
Hi Guys,
Bob - that was it (turning off the missing pt box). Went a lot faster. I
digitized your cube with 8 points in the order we do for our baseball
batters.
Had a few bad points toward the end, but passed along the .3d file to Rich
(16 pts) to play with on the skin. We'll need to make it work for different
xyz coordinate spaces for sure - probably just a toggle we'll put in.
Thanks guys,
Scott
---- Original Message ----
To: <sbendis@virsys.net>
From: "Robert Wainwright, P.T." <kincon@bellatlantic.net>
Date: Thu, 23 Dec 2004 09:59:45 -0500
Subject: Re: Auto Digitizing Question
Hi Scott
Did you digitize the calibration cube or did you copy (either is okay but
must be done before using digi xp)? Did you get all 5 video's to appear on
the screen automatically after selecting the proper first file? Second, you
must turn off the notify if missing point box under auto digi options. It is
using the new algorithm and only notifies you if unable to see two,
otherwise, it askes for help on all missing points, all pictures. I suggest
you open my completed file, note the settings and use for yours. There will
be some frames that need help if not seeing two points or extreme
acceleration but it should be good for 95% or more. It is all in the
settings.
Let me know how it goes.
Bob
----- Original Message -----
From: <sbendis@virsys.net>
To: "Robert Wainwright, P.T." <kincon@bellatlantic.net>
Cc: "GideonAriel" <gideon@arielnet.com>
Sent: Thursday, December 23, 2004 7:12 PM
Subject: Re: Auto Digitizing Question
> Hi Gentlemen,
>
> I'm trying my first attempt at using Auto Digitizing on Bob's Golfer (5
videos). For every frame there are points that it does not see (which I'll
click on manually to help finish) but it does this for every frame.
>
> Is this the process you need to help it go through? or do you hit escape
or some other feature to make it go faster?
>
> Thanks Guys,
>
> Scott
From:
manual
digitizingSubject:
gideon@arielnet.com
To:
Friday, December
03, 2004 11:21 AMSent:
Tamra Meier [mailto:TJPT@msn.com]
I sincerely appreciate your time on the phone yesterday. Could
you please answer one question for me. If I want to manually
digitize one second of video at 60 frames per second, assuming
it takes one minute to digitize each frame; will it take 60
minutes to complete this task?
You mentioned that you could provide me with the email for Vic
Braden. That would be greatly appreciated.
_________________________________________________________________________________